Universität Fribourg Université de Fribourg Suisse | Universität Freiburg Schweiz PACMAN


PACific biosciences Methylation ANalyzer

This web page allows a user to upload a bacterial full or draft genome, together with the motifs.gff file of a PacBio sequencing analysis.

The PACMAN web server will use Circos to generate a graphical view of the most important methylation motifs. The user can select among several possible views and filters. The output is a publication ready PDF or PNG.

Input FASTA (genome) (example) motifs.gff (Pacbio output) (example)
Parameters View (1 to 4 motifs) Sliding window
  Motifs on two strands
Motifs on one strand
Methylated vs non-Methylated
All 3 images
Size (bp) Step (bp)
Options Filters Output
  IPD ratio